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bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

check_vcfs_wf

checkvcf

Sanity check Variant Call Format (VCF) files.

concat_vcfs_wf

condor

COmplex Network Description Of Regulators, an R package for bipartite network analysis

fgwas

Functional genomics and genome-wide association studies

filter_vcfs_wf

fusion_twas

methods for functional summary-based imputation

integrative

Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization

merge_vcfs_wf

mklmm

Multi Kernel Linear Mixed Models for Complex Phenotype Prediction

nuxt-auth-examples

Deployed Nuxt examples

pheweb

A tool to build multi-phenotype GWAS browsers

predictdbpipeline

predixcan

Code for the in-dev PrediXcan Project

protein_predixcan

shiny-examples

sort_vcfs_wf

Merge individual sample VCFs to create a unified multi-sample VCF, optionally allowing for modification of sample names.

split_vcfs_wf

vcftogds

Convert Vcf files to Gds format

vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.