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Name: PhenoMeNal
Type: Organization
Bio: A comprehensive and standardised e-infrastructure for analysing medical metabolic phenotype data
Name: PhenoMeNal
Type: Organization
Bio: A comprehensive and standardised e-infrastructure for analysing medical metabolic phenotype data
Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
Docker containers for Bioconductor
Conda recipes for the bioconda channel.
This repository contains scripts to manage the PhenoMeNal cloud CRE.
Cloud deploy kubenow snapshot for Cerebellin
cloud-deploy-kubenow-cerebellin with a new name
Cloud deploy kubenow fork for Dalcotidine release - A separate clone is needed instead of just a branch due to the inability of the TSI Portal backend to work against a different branch than master:(
Correction of mass isotopomer distribution (MID) for natural isotopes abundance, giving artificial MID
convert zipped Bruker NMR raw data into tabulated txt file for BATMAN
Collection of annotation related methods for mass spectrometry data
R-program to read CDF files containing time course of mass spectra of 13C-labeled metabolites, and write the extracted spectra in a format appropriate for further analysis.
Eco-Metabolomics container containing R and packages used in Ecology and Metabolomics
Escher-based visualization for fluxes and concentrations generated from fluxomics data sets
Performs unsupervised clustering among a metabolic network from a fingerprint
PhenoMeNal runtime for Galaxy running inside a container orchestrator
PhenoMeNal repository for IPO
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