interesting related project about plip HOT 5 CLOSED

some doc on the definitions they use is here:
https://www.rcsb.org/pages/help/3dview#ligand-view

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Thanks for the comment.
Yes, I'm aware of the new PDB viewer and think they did a great job for visualizing complexes.

PLIP supports all of the listed interactions and additionally electrostatic interactions (salt bridges) as well as water-mediated hydrogen bonds (water bridges).

You can see the definitions used for PLIP here

As you already stated, PLIP can be also run from the command line and provides - next to visualization - also parseable XML files, which lets you integrate our tool in bioinformatics workflows.

from plip.

thanks for the details

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I've dreamed about a tool such as plip.
This is extremely nice for the chemoinformatics and structural bioinformatics research people.
And having it in open source is super cool.
Thanks a lot!

from plip.

Thank you!

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