pedrobarbosa Goto Github PK
Name: Pedro
Type: User
Location: Lisboa, Portugal
Pedro's Projects
deepintronic_benchmark
Repo that contains the data and code to reproduce the evaluation of computational methods to predict deep intronic variation.
dress
A toolkit for studying RNA splicing using deep learning models.
mutsplice
Targeted sequence perturbations at motif locations to study SpliceAI sensitivity to RBP binding features
paper_hcm_benchmark
This repo contains the code to reproduce the results obtained in the benchmark of prediction tools to predict Hypertrophic Cardiomyopathy associated variants
prepare_splicingpredictors
Set of scripts to prepare the input to run several splicing-related tools from VCF files
synthetic_datasets_generation
Code to reproduce the results from the GECCO'24 paper on generating synthetic datasets in genomicsned in the benchmark of prediction tools to predict Hypertrophic Cardiomyopathy associated variants
veta
VETA - A simple tool do evaluate variant predictors
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