paularstrpo Goto Github PK

bioinfo-scripts

miscellaneous parsing scripts and plotting functions

circdb

circular RNA database & visualization

cnmf

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

collaboration

cv

Paula Restrepo's resume/CV

digpath

exoseq

Exome Sequencing analysis pipeline for the Losic Group at Mt Sinai

gbm-case-study

Analysis for anti-PD-1 responsive GBM intratumoral heterogeneity case study

getalleler

GeTallele: a method for integrative analysis and visualization of DNA and RNA allele frequencies

image_feature_detection

deconvolute histology image labels for use in msccr cohort analysis

misc-tools

Collection of miscellaneous tools and settings to making bioinformatics easier for me to set up and do

mm-predictionengine

Precision Medicine Prediction Engine for the Lagana Lab Multiple Myeloma Omics Pipeline

mm-psn

Multiple Myeloma Patient Similarity Network

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

scarscore

Genomic Scar Score for Myeloma

spin-patient-reports

create patient reports for the DAPHNI precision medicine pipeline for multiple-myeloma

vim-dotfiles

vim configuration