Xiaoguang Pan's Projects
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
scripts for "Extrachromosomal Circular DNA Orchestrates Genome Heterogeneity and Outcome in Urothelial Bladder Carcinoma"
off-targeting assesment of Cas9 gRNAs using Julia
This is a script that call EMBOSS needle alignment tool in R
An R package is used to get the longest common substring.
Scripts for indel calling of SpCas9 for SURRO-seq
my own blog build by pynecone
Created with StackBlitz ⚡️
Personal blog site built with Nuxt3, Nuxt-Content V2 & Tailwind. Deployed in vercel
Simple speed tests for Python 3.11
A tiny web app built by reflex for self using
Using github action to build a singularity image for Circle-Map-cpp automaticlly
Build Gistic2 apptainer image using Github Action
Lecture ppt and exercises
Some scripts including library design and read analysis for SURROseq