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2tethya_genomes

The genome of the contractile demosponge Tethya wilhelma

a-short-lsu-rrna-fragment-as-a-standard-marker-for-integrative-taxonomy-in-calcareous-sponges

Alignment, secondary structure files, trees & more of Voigt & Wörheide (2016) Organisms Diversity & Evolution 16:53-64. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.

annotate-gff

Add annotations to a GFF file

aphrocallistes_vastus_genome

Aphrocallistes vastus genome

beauty_in_the_beast

bio-phyta

calcitesea

Data repository for Conci N., Griesshaber E., Rivera-Vicéns R., Schmahl W., Vargas S. and Wӧrheide G (2022) Molecular and mineral responses of corals grown under artificial Calcite Sea conditions.

haplotc

Target Capturing Genome-wide Loci in Marine Haplosclerids

keratosemuseomics

Data for Agne et al. Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny

kingdom-assignment

A Ruby gem to parse BLASTplus XML output and annotate higher rank taxonomy

kingdom-extraction

kingdom-splitter

A Ruby gem to sort out bacterial, archaeal and viral contaminations from genomic data.

mitoclocks2018

molecular-biodiversity-of-red-sea-demosponges.

Data set repository of Erpenbeck et al. (2016), Marine Pollution Bulletin 105:507-515. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.

montipora_digitata_resources

Companion repository for González-Pech et al.

plasticsbacteria

plasticssponge

Sponges as bioindicators for microparticulate pollutants

soft-sponges-tricky-tree

Data sets of "Soft Sponges with Tricky Tree: On the Phylogeny of Dictyoceratid Sponges" by Erpenbeck D, Galitz A,Ekins M, Cook SdC, van Soest RWM, Hooper JNA, and Wörheide G. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.

sonne_hexactinellida

spongillida_minimalist_barcodes

Repository for: Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida. Authors: Dirk Erpenbeck, Markus Steiner, Astrid Schuster, Martin J. Genner, Renata Manconi, Roberto Pronzato, Bernhard Ruthensteiner, Didier van den Spiegel, Rob W.M. van Soest, and Gert Wörheide

transpi

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

transpi_paper

TransPi - Supplementary files

triangulation

Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.