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aibst_nov_2022

Repository for the AiBST course (November 2022)

as_analysis

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq

awesome-chatgpt

⚡ Everything about ChatGPT

awesome-compbio-chatgpt

An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

biochatter

Backend library for conversational AI in biomedicine

cancer_prostate

Multiomic Data Analytics Integration in Prostate Cancer

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

code-of-scrna-in-osteoarthritis

We screen marker gene, cellular molecular function and potential miRNA for osteoarthritis osteoblasts based on single-cell RNA sequencing data, and in addition to this, we have identified osteoarthritis osteoblast subpopulations and genetic signatures to explore the role of osteoblasts in the pathogenesis of osteoarthritis at the genetic level.Now

cryptosex_manuscript

Code and data for Tandel et al. manuscript on Cryptosporidum pavum sexual differentiation

data_science_in_biology

projects using galaxy, python, linux command line to analyze sequencing data

datasets

django-todo-app

This is an app for managing your todos

dna-sequencing-fa-fastq-python

gatk_variant_calling

This pipleline will run from QC to Variant annotation of Next Generation Sequencing Data

gene-and-variant-curation-tools

ClinGen's gene and variant curation interfaces (GCI & VCI). Developed by Stanford ClinGen team.

helminths_2021

lcwgs-guide-tutorial

lilikoi2

loftee

mixomics

Development repository for the Bioconductor package 'mixOmics '

ml-class-assignments

Programming Exercises on http://ml-class.org

my-cv

This is my online CV

oastratification

Stratification of Knee Osteoarthritis: Two major patient subgroups identified by genome wide expression analysis of articular cartilage.

page.jekyllrb.github.io

portfolio.github.org

This is a tutorial on how to build a blog

rvtests

Rare variant test software for next generation sequencing data

scerte

scflow

Single cell pipelines

scrna_pre_process

Processing scRNA-seq data with kallisto|bustools pipeline

secrets

This is a node js secret app for keeping and sharing little secrets.The purpose is to improve authentication of the app