Comments (13)
I think the second link is about right - though since it's old it's likely a bit out of date. In any case, since you setup Jupyter, RStudio is going to be similar to it.
That said - you can always take a look at our production Rstudio app - https://github.com/OSC/bc_osc_rstudio_server. This is the Rstudio app we use in production at OSC.
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Hi,
Before we add R I believe we need to make sure that OoD works fine.
-
We are currently use OoD to launch Jupyter app and although it works in principle, there are issues with Proxies.
-
When we try to connect to the jupyter session it gives:
What is the reason for the delay in the DNS resolution?
Any settings we should check?
- If I add
IP FQDN
to the /etc/hosts filr on the machine where OoD works it is able to connect to Jupyter
- If I try to connect to the Terminal
Any reason for this?
Settings we can check?
from ood-documentation.
any advice is appreciated
Kind regards
Roberto
from ood-documentation.
Hi there,
With some help we were able to add Rstudio to OoD.
The app appears in the list of the interactive apps:
We are using a singularity image that we are loading from the file script.sh.erb in
/var/www/ood/apps/sys/rstudio/template
It is possible to submit a job. However, it terminates immediately meaning that something stops in using the singularity image
In trying to run the script directly on the login node we get:
Is it a matter of permissions/users IDs etc?
Please advice
Roberto
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While running as root .... gives
Many thanks
Roberto
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That is after loading the proper environment:
Please advice
Roberto
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Regards
Roberto
from ood-documentation.
After adding
the error disappeared ....however, the session still terminates ...immediately...
in
no errors in
Any idea?
Many thanks
Roberto
from ood-documentation.
I tried submitting the job with Open on Demand invoking a session of Rstudio
I got in the output log in my home directory
====================================================
I suppose it is a network/authentication issue?
Any advice?
Many thanks
Roberto
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You should look at our production application. One thing to note is that we reconfigure where the output logs should go. Inside the container, you're logging to /var/log
You can see from this configuration - we are logging to the staged_root
instead of /var/lib. This log file will tell you what's going on/why it's crashing.
https://github.com/OSC/bc_osc_rstudio_server/blob/master/template/etc/logging.conf.erb
from ood-documentation.
Now ...we are trying using a different repo and NOT the singularity container.
We got the error
after connecting to the "running" session.
depending on what we use for --auth-none
With
--auth-none 1
we get a caching error
With
--auth-none 0
we get a login session and we cannot get anywhere ... (csf errors and so on...)
..still investigating
Roberto
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The repo we are using is
https://github.com/mcw-rcc/bc_rcc_rstudio_server
from ood-documentation.
We are using Almalinux s our operating system. Would this create issues?
Kind regards
Roberto
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Related Issues (20)
- Review Information in Requirements HOT 1
- missing documentation on ood_dataroot
- Misconfigured Custom Job Submission Example HOT 1
- Extracts novnc connection compression & quality into Configuration variables
- find_port $1 as host and not minimum port HOT 1
- Outdated Installation Instructions for Ubuntu 20.04 - 22.04 and Debian HOT 1
- Broken link for `user_map_match`
- Add Globus Doc Example
- keycloak docs are way out of date
- Make downloads folder with pdf/epub variants of documentation available HOT 2
- documentation for keycloak federation
- Removes NavConfig class & Replaces its use
- Remove `app_root` Setting
- add docs for heartbeat frequency
- add the ability to define default launcher fields
- For sub apps - Document use of local/ directory
- OSC RStudio App erroring HOT 17
- Adds ability to filter modules w/ string or regex
- Adds dynamic labels to form with data-label-*
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