orangesi Goto Github PK

pyasynteny

different assembly result compare by synteny

pygenestruct

pygtrait

genome chromosome traits or marker annotation plot

pykits

simple python script for bioinformatics

pymsaploter

plot Multiple Sequence Alignment(MSA) of Clustal by python package

pyte

Simple VTXXX-compatible linux terminal emulator

python

python-fire

Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.

python-mastery

Advanced Python Mastery (course by @dabeaz)

python_notebook

pyvenn

2 ~ 6 sets venn diagram for python

rr

a simple bookmark tool by crystal-lang in command line of terminal for lazy guy in Linux

snp-dists

Pairwise SNP distance matrix from a FASTA sequence alignment

svploter

show structure variation of genome covered by long-reads or short reads

svviz

Read visualizer for structural variants

svviz2

for visual evaluation of read support for structural variation

syntaxer

Multi-backend syntax highlighter for Crystal

termtosvg

Record terminal sessions as SVG animations

three.js

JavaScript 3D library.

tinypandas

easy-to-use data structures and data analysis tools ( still be in draft, inspired by Python Pandas )

trimgalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

wasmer-crystal

WebAssembly runtime for Crystal

webuploader

It's a new file uploader solution!

whatshap

write_a_genome_assembler_with_ipython

The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python