orangesi Goto Github PK

git-tips

:trollface:Git的奇技淫巧

git_usage

grainbow

show the genome structure variation or assembly error by pair-end or mate-pair reads

grepfile

a alternative for $grep -f A.list B.list which cost too many memory and time

gssplayground

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

gtrellis

Genomic plot in trellis layout

heatmapy

simple categorical heatmap or segment value-color free defined by user

idba

integron_finder

Bioinformatics tool to find integrons in bacterial genomes

isfinder_database

download isfinder database

jfire.jl

Jfire is a simple julia package for auto generate command line interfaces (CLIs) to call functions or modules, inspired by fire package of python

jgi-query

A simple command-line tool to download data from the Joint Genome Institute's database

learning-bioinformatics-at-home

resources for learning bioinformatics

leetcode

正确的姿势，学习的态度来刷 LeetCode：高效的代码、简洁的注释、精炼的总结。

lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

lolisafe

Blazing fast file uploader and awesome bunker written in node! 🚀

lrs_sv_sets

VCF files of SVs using long-read sequencing (LRS).

lrscaf

TGS scaffolding

markd

Yet another markdown parser, Compliant to CommonMark specification, written in Crystal.

muscle

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

num.cr

Scientific computing in pure Crystal

oddgenes

A small database of weird gene annotations

os.js

JavaScript Cloud/Web Desktop Platform

pairsnp

A set of scripts for calculating pairwise SNP distance

pampredict

A python package to predict CRISPR-Cas PAMs

panel

A high-level app and dashboarding solution for Python

pathongs

Pathogen NGS Documentary

pgdoc-cn

PostgreSQL manual Chinese translation by China PostgreSQL Users Group

pmsaexplore

online explore protein multiple sequence alignment for primary/secondary/3D structure by https://orangesi.github.io/pmsaexplore/

pyasynteny

different assembly result compare by synteny