Comments (6)
KamalakerDadi
commented on August 20, 2024
Hi OpenNeuro team, cc @chrisfilo
My general thoughts on having these metadata like:
-
Data versions (because we have multiple versions for each dataset)
- Example: For dataset ds000001 we have 4 different versions.
- And adding few more deatils in README document saying what is the difference
between each versions.
-
which pipeline a user is interested ?
- In this pipeline again, which version ? Here may be we can propagate through Job ID.
Because Job ID is assigned to download url.
- In this pipeline again, which version ? Here may be we can propagate through Job ID.
Could help users query the data easily to download by writing their own scripts (downloaders).
My thoughts are based on what I have seen so far. I might also be understood wrong.
Thanks a lot for your amazing work.
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chrisgorgo
commented on August 20, 2024
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rwblair
commented on August 20, 2024
Above link is an idea for a specification for serving more detailed information about files in datasets than is currently provided by the openfMRI api.
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rwblair
commented on August 20, 2024
Notes on what the old public api returns and what currently in OpenNeuro can be used to give similar results:
| OpenfMRI api fields | Corresponding fields currently in OpenNeuro |
|---|---|
| accession_number | dataset id |
| project_name | name |
| summary | readme |
| sample_size | len(subject_list) |
| scanner_type | |
| acknowledgements | acknowledgements |
| license_title | license (license name not explicit) |
| license_url | license (url for license not explicit) |
| publicationdocument_set | digital documents |
| publicationpubmedlink_set | references and links |
| task_set | available tasks (no cognitive atlas id) |
| revision_set | |
| investigator_set | authors |
| link_set | |
| contacts |
- Some places make use of the cognitive atlas id so the ability to store that along side the task name might be necessary to add back at some point.
- link_set is typically a list of links to tarballs on s3. Could this be replaced with links to openneuro.org/api/snapshots/download?
- the curated field is no longer needed.
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nellh
commented on August 20, 2024
@chrisfilo Would this still be useful? We added a stub for this during the DataLad implementation that could be finished to provide these APIs on top of the GraphQL backend.
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chrisgorgo
commented on August 20, 2024
I think we have bigger fish to fry in the short term, and power users can
already access public graphql endpoint.
…On Wed, Oct 31, 2018 at 11:16 AM Nell Hardcastle ***@***.***> wrote:
@chrisfilo <https://github.com/chrisfilo> Would this still be useful? We
added a stub for this during the DataLad implementation that could be
finished to provide these APIs on top of the GraphQL backend.
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Related Issues (20)
- Retroactively shard dataset into subdatasets HOT 2
- Stanford Digital Repository git-annex remote
- git clone failing and consuming large amounts of memory HOT 2
- Lists of references and links are not displayed as lists on snapshots
- Expose related DOIs in public metadata tab
- Expose related DOIs in JSON-LD header block
- Schema validation results are sparse
- `InternalError: too much recursion` for ds004504 HOT 5
- Openneuro viewer only lets you view the first few TRs HOT 1
- ORCID and Google log in HOT 1
- curl script generation times out on large datasets HOT 1
- ds003404 has large object and is not syncing to github
- Bus error when using openneuro-cli on UPenn's cluster HOT 4
- Git pushes fail when the remote index needs refreshing
- New CLI tools should show progress while hashing files
- Error when downloading dataset with datalad HOT 9
- Adding REST-API links to OpenNeuro datasets using NeuroJSON.io database interface
- ds003645 Cannot retrieve data from S3
- ds000246 S3 URL not working for some files HOT 1
- openneuro CLI draft download of dataset fails
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