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ChristianLieven avatar ChristianLieven commented on May 30, 2024

Once the tests pass I will open a pull request and this is good to go.

I must add though that I couldn't implement all the Reaction/Metabolite suffix standards as outlined in the Supplement of [1]. I left out the tags for reversible, irreversible, Dehydrogenase and Synthetase reactions. The latter two because it is hard to do assert that in code and the former two because I don't fully understand the point. From observing the BiGG Database these are the least-consistent tags. I am open to add them in the future though.


[1] Thiele, I., & Palsson, B. Ø. (2010, January). A protocol for generating a high-quality genome-scale metabolic reconstruction. Nature protocols. Nature Publishing Group. http://doi.org/10.1038/nprot.2009.203

from memote.

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