Comments (7)
good point Yarik - we haven't gone that far in carefully organizing it but this a good time to clean this up before broader annoucement! prefixing all CLI scripts with mrqa_
* is a good idea.. we might have to update some docs cc @sinhaharsh
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*all lowercase is intentional to save some effort with the shift key :)
from mrqa.
prefixing all CLI scripts with
mrqa_
* is a good idea..
- so you don't want to just have a single
mrqa
entry script "to rule them all"?
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i was referring to any future sub-functionalities we offer. one feature we haven't documented yet, for which mrpc_subset
is the entry point, is the massively parallel processing capabilities of mrQA
that we had to develop to process the ABCD dataset quickly. Perhaps we should call that mrqa_parallel
and the rest just mrqa
:)
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may be, or mrqa parallel
;-)
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certainly! i am not sure how much more work that is compared to the easier of the options to add another entry point?
i can use that syntax being useful as mrQA starts to offer its full functionality in terms of both vertical audit (not implemented yet) and horizontal audits etc
mrqa horizontal --path /proj --style dicom
mrqa vertical --path /proj --style bids
but its just work someone needs to do, and we can't prioritize this until we get vertical audit implemented and evaluate it on a few big/open datasets :)
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also, that makes think @sinhaharsh , we should rename --style
to be --format
unless you have reasons you told me about and I forgot? :)
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Related Issues (20)
- ENH : Filepaths to each non-compliant subject and session
- Use 'acq' and 'task' as a suffix for modality name HOT 3
- incremental mode of operation HOT 5
- ENH: Report should include more information about non-compliant values HOT 2
- How to identify sequences in the same session? HOT 2
- A special vertical audit: ensure multiple runs of the same sequences are compliant
- Add to documentation for mrqa_monitor : What if subjects are deleted?
- Produce compliant subset
- Exclude MoCo Series from compliance evaluations HOT 5
- Real-time mrQA
- Provide a timeline
- Differentiating between sessions with and without C02
- Different number of sequences for Subjects across Sessions on different dates
- Checking field maps in each session
- Differentiating between Raw/unprocessed scans and processed/derived scans HOT 5
- Monitoring Log : delta updates since last compliance check
- include coil info parameter HOT 3
- Do all sessions/subjects have all the sequences?
- No DICOMs found HOT 4
- No DICOMs found (Bruker 7T Preclinical) HOT 5
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