Related Issues (20)
- Add a converter from _CNEr_'s `Axt` and `GPairs` format to `GBreaks`
- A function to return "double gaps"
- A `stringDist()` method for `GBreaks`
- Dockerfile fails to build HOT 1
- Implement a r distance index
- flagLongShort outputs wrong flages on non-sorted GBreaks objects.
- Add a new function to fill inversions.
- Functions to align flanks of breakpoing regions.
- bridgeRegions crashes when there are no colinear regions.
- `+` operator should extend both the target and the query ranges
- Implement ρ and λ measures of synteny from Housworth and Postlethwait 2002
- Add L50 to summaries related to widths
- `makeOxfordPlots` crashes when `sum(seqlengths(gb)) > .Machine$integer.max`
- flagInversions(GBreaks()) fails
- Add functions to compute percent identity etc.
- guessSeqLengths should return a vector, not an array
- Reconsider cleanGaps as of GRanges 1.54.0
- isReduced()
- accept fasta file for load_genomic_breaks() HOT 1
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from genomicbreaks.