Comments (5)
davidhcar
commented on July 17, 2024
Bringing back as I am seeing ton of this. The error in this case appears when enabling AtlasRegularSecurity,
https://localhost:8888/api/v1/analyze/metrics
Connection refused (Connection refused)
java.net.ConnectException: Connection refused (Connection refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:607)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:288)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:203)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1162)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1056)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:189)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1570)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1498)
at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getResponseCode(HttpsURLConnectionImpl.java:352)
at org.glassfish.jersey.client.internal.HttpUrlConnector._apply(HttpUrlConnector.java:399)
at org.glassfish.jersey.client.internal.HttpUrlConnector.apply(HttpUrlConnector.java:285)
at org.glassfish.jersey.client.ClientRuntime.invoke(ClientRuntime.java:252)
at org.glassfish.jersey.client.JerseyInvocation$1.call(JerseyInvocation.java:684)
at org.glassfish.jersey.client.JerseyInvocation$1.call(JerseyInvocation.java:681)
at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
at org.glassfish.jersey.internal.Errors.process(Errors.java:228)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:444)
at org.glassfish.jersey.client.JerseyInvocation.invoke(JerseyInvocation.java:681)
at org.glassfish.jersey.client.JerseyInvocation$Builder.method(JerseyInvocation.java:411)
at org.glassfish.jersey.client.JerseyInvocation$Builder.get(JerseyInvocation.java:311)
at org.ohdsi.webapi.executionengine.service.ExecutionEngineStatusServiceImpl.checkExecutionEngineStatus(ExecutionEngineStatusServiceImpl.java:50)
at sun.reflect.GeneratedMethodAccessor251.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.scheduling.support.ScheduledMethodRunnable.run(ScheduledMethodRunnable.java:65)
at io.opentelemetry.javaagent.instrumentation.spring.scheduling.SpringSchedulingRunnableWrapper.run(SpringSchedulingRunnableWrapper.java:35)
at org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.java:54)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
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chrisknoll
commented on July 17, 2024
This is the code that's calling out to that endpoint. What is your executionengine.url paramater set to? I don't think this has to do with AtlasSecurity.
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konstjar
commented on July 17, 2024
Execution Engine is an independent application serving on 8888 port by default. It's complimentary service to WebAPI. You can configure it if you want to run Estimations or Prediction analysis directly from ATLAS.
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davidhcar
commented on July 17, 2024
Thank you @chrisknoll and @konstjar !!
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dailiwei
commented on July 17, 2024
Execution Engine 是解决Atlas 在线分析的分析引擎(当我们进行群体评估或者患者水平预测)。他是支持运行R的执行包得出结果，和webapi进行交互，监测状态。启动执行引擎（java和R环境）之后把相关地址配置到webapi的配置，进行在线分析，之后分析下载的结果
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Related Issues (20)
- Proximal logic for events while designing a Cohort
- Enhance Cohort generation routine results with simple summary demographics HOT 1
- Non-Standard Concepts mapped to Standard Concepts to be replaced by Standard Concepts by the "Optimize" functionality of a Concept Set HOT 1
- Extend Posit Connect Shiny applications with Analysis Execution Results from WebAPI
- Priority call causes application hang in initial load for ATLAS HOT 1
- ddl/achilles endpoint is missing the tempSchema parameter HOT 2
- Two sequences for sec_permission table HOT 3
- has[Write|Read]Access does not use wildcard permissions HOT 1
- WebAPI 3.0 Change List HOT 3
- Incorrectly redirects on login via nginx reverse proxy HOT 3
- Memory Usage WebAPI HOT 3
- Provide configuration option to disable source connection checks HOT 2
- Error fetching generations for CohortPathways HOT 1
- Illegal Annotation Exception HOT 5
- Incorrect CohortPathway result when creating non-overlapping cohorts for analysis. HOT 1
- OHDSI WebAPI JDBC Driver Connectivity Issues With DATABRICKS HOT 9
- Cannot open ports on Tomcat HOT 1
- AtlasRegularSecurity breaks connection to WebAPI HOT 4
- CDM session credential pass-through.
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