Comments (8)
Hi,
Can you post the full ouput of running irap (and add --trace to the list of command line options)?
Thanks,
Nuno
from irap.
Hey,
I will rerun with:
irap --trace conf=RNA_1_4Core.conf
Is this correct? And is there a log file of the run?
from irap.
No, there is no log file - everything is printed to stdout (but it may be redirected to a file).
Could you then run
irap --trace conf=RNA_1_4Core.conf &> logfile
and post the logfile?
from irap.
Hey,
I did it now, but with the --trace option, I got a different error message. I start a run without trace and see what happens then.
But here is the log.
log.txt
from irap.
Thanks, the log file is quite useful as is. I suspect that you are running iRAP in a debian based distribution. Is that true?
from irap.
Hey,
thats good to hear. I use Ubuntu 12.04.
from irap.
It seems that the rename command in Debian is different from the other distros and that is causing the error. I'll try to fix it and release a patch in the coming days.
from irap.
Hi,
The issue should be fixed in the new release. Please reopen the ticket if the problem persists.
Cheers.
from irap.
Related Issues (20)
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- irap_raw2metric no html file, not gzipped HOT 7
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- RSEM strandness HOT 12
- TPM values rounded to 2 decimals HOT 3
- Docker link in wiki is wrong HOT 1
- Error running Docker image HOT 2
- iRAP's Kallisto call seems to provide read length at fragment size parameter HOT 1
- sh: 1: set: Illegal option -o pipefail error in "irap_gtf_to_fasta". HOT 4
- iRAP does not recognise stage0 completion for large genomes with HISAT2 HOT 5
- docker image for v1.0.1 HOT 2
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from irap.