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nsogon's Projects
alphafold
Open source code for AlphaFold.
alphamissense
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
gatk
Official code repository for GATK versions 4 and up
gatk4-exome-pipeline
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
gatk4-genome-pipeline
Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the link the ReadMe to obtain the latest version of the workflow.
genomics-cloud
Source code and related materials for the O'Reilly book
python-programming-easy
Materials for Intro to Python video series
skylab
Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines
test-github
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