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novapyth's Projects

adminlte icon adminlte

AdminLTE - Free admin dashboard template based on Bootstrap 4

ads1-slides icon ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

aloft icon aloft

ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.

amrseq icon amrseq

AMRseq - Whole genomic sequencing of Bacterial pathogen for unravelling anti-microbial resistent (AMR) traits

annotsv icon annotsv

Annotation and Ranking of Structural Variation

apptainer icon apptainer

Apptainer: Application containers for Linux

augur icon augur

Pipeline components for real-time phylodynamic analysis

automap icon automap

Tool to find regions of homozygosity (ROHs) from sequencing data.

awesome-perl icon awesome-perl

A curated list of awesome Perl frameworks and libraries. Come on Pull Requests!

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awsfs icon awsfs

Treat AWS resources like a filesystem for cloud-command-line bliss.

bamslicer icon bamslicer

Slice and dice controlled-access BAMs for thousands of samples

bamstats icon bamstats

A command line tool to compute mapping statistics from a BAM file

bandage icon bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

baobab.lims icon baobab.lims

Baobab LIMS is an open-source laboratory information management system (LIMS)

bashbone icon bashbone

A (bio-)bash library for workflow and pipeline design

bat icon bat

A cat(1) clone with wings.

bazam icon bazam

A read extraction and realignment tool for next generation sequencing data

bcbb icon bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bcbio-nextgen icon bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

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