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16s-rdna-v3-v4

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

amplicon

Statistics and visualization for amplicon data

biofx_python

Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

breast-cancer-risk-prediction

Classification of Breast Cancer diagnosis Using Support Vector Machines

bs-seq-snakemake

coda

This is the method CODA(covariation-induced deviation of activity) introduced in the paper "Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity".

command-line-text-processing

:zap: From finding text to search and replace, from sorting to beautifying text and more :art:

coursera-ml-andrewng-notes

吴恩达老师的机器学习课程个人笔记

data-science-notes

Open-source project hosted at https://makeuseofdata.com to crowdsource a robust collection of notes related to data science (math, visualization, modeling, etc)

functional-annotation

Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.

ggthemes

Additional themes, scales, and geoms for ggplot2

lefse

luotao_rna-seq

machine-learning-homework

Matlab Coding homework for Machine Learning

machine_learning_in_action

Important book about the machine learning algorithms, and introduces the application of those who use these algorithms and tools, and how to use them in a real environment. This book and other books, behind the other books are long on machine learning theory knowledge, the book happened to be more discussion on how to use coded machine learning algorithms.

metagenomic_snakemake

Metagenomic Snakemake

microbiome

microbiome R package

ml_medbioinfo

Machine Learning in Medical Bioinformatics

modeling-and-data-mining-methods-for-survival-data-with-an-emphasize-on-r-software-

mp_duty

抓取网络文章到github issues保存

nanoseqsnakemake

An adaptable, reproducible Bioinformatics pipeline for third generation RNA-sequencing data built using Snakemake.

nolanjj.github.io

note

pytorch_tutorial

《Pytorch模型训练实用教程》中配套代码

r_bilibili

rekcarc-tsc-uht

清华大学计算机系课程攻略 Guidance for courses in Department of Computer Science and Technology, Tsinghua University

rna-seq-analysis

RNAseq analysis notes from Ming Tang

rnaseq-workflow

A repository for setting up a RNAseq workflow

rnaseqstat

A Pipeline to Process RNAseq Data

rnaseqstat2