nnoll Goto Github PK
Name: Nicholas Noll
Type: User
Company: Karius
Bio: I'm a quantitative biologist interested in microbial evolution using computational inference techniques inspired by statistical physics.
Location: Goleta, California
Nicholas Noll's Projects
basel_carbapenemases
Includes all code necessary to reproduce the analysis of our 2018 comparative genomic analysis of Carbapenemase producing bacteria isolated in Basel.
freetype2
Customized freetype2 library
minimap2_jll.jl
plasmids
For nextstrain
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
qbio2017
collections of scripts used during the 2017 KITP.qbio course
seqancy
A custom wrapper for the seqan library, exposed to python via cython.
seqspace
Library to normalize scRNAseq expression data and learn its underlying geometric structure
tissueanalysissuite
A complete set of MATLAB code to segment live-image movies of developing epithelial tissues, track cellular flows, and infer intercellular stresses.
vertexmodelsimulation
Simulates a growing, dividing epithelial tissue under the active tension network model, as well as under finite pressure differentials.
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