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asd-jre-public

Code + Pipelines for the NDAR ASD pipelines

azure-repos-vscode

Visual Studio Team Services Extension for VS Code

bwa-pipeline

conifer

CoNIFER (Copy Number Inference From Exome Reads) can discover CNVs from exome read-depth data. See Krumm et al., 2012 (Genome Research) for more information.

conifer-tools

CoNIFER Tools - Tools for improving call generation, annotation and filtering. Used in conjuction with CoNIFER (Copy Number Inference From Exome Reads)

crux-pipeline

dada2-nf

A Nextflow pipeline for processing 16S rRNA sequences using dada2

demux-nf

A nextflow demux pipeline

docker-nginx

NGiNX HTTP server

dokku

A docker-powered PaaS that helps you build and manage the lifecycle of applications

dokku-nginx-logging

Plugin for dokku that copies a nginx.conf.sigil to each app on post-extract.

dokku-odoo

A Odoo image ready to be deployed on dokku mini-PaaS

flask_uwnetid

frfast

frFAST: (frankenFAST), a lightweight pipeline designed to calculate read-depth across an exome or genome using the mrsFAST mapper

gauss

GAUSS: Genome Annotation Umbrella for SNVs and Structure

genie_pipeline

GENIE = GErmline VarIEnt Pipeline

genomic_costs

gtctovcf

Script to convert GTC/BPM files to VCF

hcov19-nf

hello

test nextflow script

hrd-pipeline

igv-snapshots-nf

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

knowledgesystems-k8s-deployment

Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes

livebooth

A simple photobooth server and webapp. Watches an incoming folder and serves to web. Built with node + react.js.

logspout-s3

[NOT MAINTAINED] Logspout Adapter for AWS S3 to send docker logs to S3 - ready for Athena

marvin

medsearch

mixcurve

A library for 1:1 mixing study interpretations

ml4a-guides

practical guides, tutorials, and code samples for ml4a