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applied-ml

📚 Papers & tech blogs by companies sharing their work on data science & machine learning in production.

bcbio-nextgen

Validated, scalable, community developed variant calling and RNA-seq analysis

epimirna

Code and data related to EpimiRNA network analysis

github-slideshow

A robot powered training repository :robot:

hello-github-actions

kdd2014

kdd2014PrizeWinner

network-analysis

Network analysis of biological data obtained from different sources such as Protein , Gene regulatory network , Metabolic ..

ngs

NGS data analysis codes

pattern_classification

A collection of tutorials and examples for solving and understanding machine learning and pattern classification tasks

phylogenomics

Phylogenomics analysis of whole genome data

predictive-modelling

r_scripts_for_common_analysis

Some common R scripts which can be used for different purpose

rna-seq-diff-exprn

RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).

scireader

Monitor and display new content from scientific journals.

scrapy

Scrapy, a fast high-level screen scraping and web crawling framework for Python.

script

common script for bioinformatics analysis

scripts

Scripts developped over time and (sometimes) still usefull

sgn-home

per-developer versioned home directories for miscellaneous work

short_script

Scripts commonly used in bioinformatics analysis NGS data

spoon-knife

This repo is for demonstration purposes only.

tmp

utils4bioinformatics

Little code snippets that do (hopefully) useful things

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities