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I'm a bioinformatics guy who is driven by creating solutions in python.

Projects

Below are some of my published projects divided by the catogory they belong to.

name description
LigandMapper.py A python standalone program that predicts ligand binding sites on proteins. (see: Example video)
TIE bot A bot for making an appointment for TIE (tarjeta de identidad de extranjero) in Spain
Data Mining and Machine Learning Analysis of biological data with Python (projects: 2 and 3)
Bayesian Statistics Bayesian Statistics examples in biology
Python for Bioinformatics Bioinformatics exercices for basics in python and more advanced concepts (OOP, Exception Handling) in the later folders
Web development in Django See below (after R)

name description
RNA-Seq analysis Reproduciton of a publication regarding gene expression in different phases of lactation in humans
Data Mining and Machine Learning Analysis of biological data with R (project: 1)
Olig2 Analysis A a chip-seq analysis in R to investigate OLIG2 as a transcription factor.

name (github link) live description
Hospital Management Web App here A webapp for managing patient registration, health check-ups and diagnosis-treatements.
Clustal Web App here A django web application to perform multiple sequence alignment using Clustal-Omega
Other django projects Some basic projects that made me feel more comfortable with django

name description
SQL exercicses Solutions for SQL problems from the book: Practice Problems: 57 Beginning, Intermediate, and Advanced Challenges for You to Solve Using a "Learn-by-Doing" Approach by Vasilik, Moestl Sylvia

name live description
Clustal Web App here A php web application to perform multiple sequence alignment using Clustal-Omega

name description
fastascan A basic shell script that finds and analyses fasta and fa files of directory and subdirectories

Other languages and tools I have experience in:

niqolla's Projects

clustal_web_dbw icon clustal_web_dbw

A django web application to perform multiple sequence alignment using Clustal-Omega

fastascan icon fastascan

basic shell script that finds and analyses fasta and fa files of directory and subdirectories

ieo_rnaseq_project icon ieo_rnaseq_project

eproduciton of a publication regarding gene expression in different phases of lactation in humans

ligandmapper.py icon ligandmapper.py

A python standalone program that predicts ligand binding sites on proteins.

olig2 icon olig2

Analysis of the phylogeny and domains of OLIG2, as well as its expression in cerebral cells using t-SNE. And a chip-seq analysis to further investigate OLIG2 function.

sql_exercices icon sql_exercices

Solutions for SQL problems from the book: L Practice Problems: 57 Beginning, Intermediate, and Advanced Challenges for You to Solve Using a “Learn-by-Doing” Approach by Vasilik, Moestl Sylvia

tie-spain icon tie-spain

A bot for making an appointment for TIE in Spain

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