Comments (4)
The issue is your output directory. You're specifying a directory that's in root. You should specify output directories you have write access to. For example, this worked for me:
~/bin/FAVITES/run_favites_docker.py -c test.json -o test
where test.json
is the config file you list here
from favites.
Actually, looking at this, your error was when my script tried to run the docker images
command, which is strange because I just ran it fine right now on Calab
from favites.
I'm able to consistently run docker images
and whatnot on Calab, so I'm going to close this
from favites.
from favites.
Related Issues (20)
- Allow some communities to have 0 seeds HOT 1
- Create helper script that labels internal nodes of output trees HOT 1
- float('inf') in CONFIG file doesn't work in run_favites_docker.py (and potentially Singularity) HOT 1
- Implement πBUSS as a SequenceEvolution module
- Breaks when using "-u" in command line and not specifying the version HOT 2
- "KeyError: 'None'", for my Transmission Network File HOT 2
- Running config_designer.py causes my computer account logging out HOT 3
- No such file or directory: 'ID_xxx_simple.nex' HOT 2
- Create transmission module implementations for EoN
- Does not properly identify seed nodes HOT 2
- Issue with label_internal_nodes helper script HOT 1
- Allow user to specify sample times in file HOT 1
- Add ReSeq
- Enquiry about backward-in-time models HOT 5
- Add SANTA-SIM
- run_favites_docker.py only works on Linux with sudo HOT 3
- Sampling times file not found HOT 3
- config_designer.py fails to write JSON HOT 2
- ERROR? HOT 2
- Error on running run_favites.py HOT 4
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