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acqengj

Java-based acquisition engine for Micro-manager

adodb

ADOdb is a PHP database class library that provides powerful abstractions for performing queries and managing databases. ADOdb also hides the differences between DB engines so you can easily switch them without changing your code.

bigdataviewer_fiji

boofcv

Fast computer vision library written entirely in Java.

cl-kernel-bindings

Minimal set of code to make use of the clij opencl kernels without imagej dependencies

clearcl

Multi-backend Java Object Oriented Facade API for OpenCL.

cleargl

Facade API on top of JOGL (http://jogamp.org/jogl/www/) offering a simple interface for creating OpenGL contexts/windows, GLSL shader programs, and textures. Use it in your favourite JVM-based language.

clearvolume

ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. With ClearVolume you can see live on your screen the stacks acquired by your microscope instead of waiting for offline post-processing to give you an intuitive and comprehensive view on your data.

clij-core

clij-opencl-kernels

colony_blob_bleacher

Python project to automatically select colonies and bleach blobs within using Pycro-Manager

dispimfusionui

ImageJ2 UI for diSPIM fusion code

fourierconvolutioncudalib

Implementation of 3d non-separable convolution using CUDA & FFT Convolution

freezer_monitor

PHP scripts to automate monitoring of Omega Temperature sensors

futuremmcore

Place to discuss the future design of a universal microscope hardware interface

i2k-mm

imagej-omero

Server- and client-side communication between ImageJ and OMERO

imagej-updater

The automatic updater for ImageJ

imagej.github.io

GitHub Pages for ImageJ

lasercutterdesigns

lightsheetmanager

micro-manager

Microscope control and image acquisition integrated with ImageJ.

micro-manager.github.io

Micro-Manager website source

minimal-mistakes

A responsive Jekyll theme with clean typography and support for large full page images.

mmclearvolumeplugin

Micro-Manager 2.0 plugin that opens datasets in the ClearVolume 3D viewer

mmcoreanddevices

Micro-Manager's device control layer, written in C++

mnfinder

ndtiffstorage

N-dimensional, multiresolution file format for Micro-Manager

ndviewer

N-D multichannel multiresolution image viewer for Micro-Manager

omero-test-infra

Test infrastructure for decoupled repositories