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awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

awesome-chatgpt-prompts

This repo includes ChatGPT prompt curation to use ChatGPT better.

datasharing

The Leek group guide to data sharing

dl4dummies

Deep Learning For Dummies - code repository maintained by one of the authors

docker-flask-gunicorn-nginx

Bootstrap example of a Flask app served via Gunicorn and Nginx using Docker conteiners

docker_singlecell

A docker image for singlecell analysis

elodie

An EXIF-based photo assistant, organizer and workflow automation tool.

generative-ai-for-beginners

18 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

glances

Glances an Eye on your system. A top/htop alternative for GNU/Linux, BSD, Mac OS and Windows operating systems.

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

knowledgebase

recipes that save time

library

个人书籍目录

nasqar

NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization

openslice

Core implementation of the OpenSlice system and the associated CompRef demonstration site (http://compref.fenyolab.org) as described in the publication "OpenSlice: Quantitative data sharing from HyperPeaks to global ion chromatograms (GICs)." (https://www.ncbi.nlm.nih.gov/pubmed/27436706)

photoprism

AI-Powered Photos App for the Decentralized Web 🌈💎✨

plotly-dashboards-with-dash

This is the repo for the Udemy Course Python Dashboards with Plotly's Dash

prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

repdata_peerassessment2

Project Assessment for Reproducible Research Coursera

rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

sarek

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

signature-commons

A docker-compose for deploying the entire signature-commons stack

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

tutorials

tw5

Host your tiddlywikis in GitHub pages without any git knowledge or installing any software

velocyto-notebooks