Full-sized dataset about viralrecon HOT 10 CLOSED

I'm working on it, this full dataset where should be upload? Because I don't think there will be enough space in the test_repo.

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Ideally, it should be available on the web so it can be downloaded at run-time e.g. when running tests locally or on AWS.

Hmmm...this might be a problem if it's something that you have generated in-house. Are there any public datasets available that tick all of the boxes?

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I've gotten the permission to use two in-house samples, we can upload it somewhere, what do you use? Zenodo?

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Um no idea @ewels any ideas where we can upload some in house full-sized datasets to test the pipeline? I don't believe they exist publicly so that isn't an option.

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Not come across this problem before. I guess Zenodo or Figshare or somewhere like that where we can get a stable persistent URL.

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Ok, I've uploaded two samples to https://zenodo.org/record/3735111

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This looks perfect @saramonzon 💯 Maybe we could use Zenodo to upload some other (larger) files that may be required for the pipeline too 🤔

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Yes! It's really cool!

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We now have a full sized test-dataset for amplicon data on Zenodo. Hoping that we can create a samplesheet to pull the SISPA data on SRA using the proposed implementation from #6. Do you have the SRA ids and some sample info for this data @saramonzon ?

Will need to edit and add that info into this file:
https://github.com/nf-core/test-datasets/blob/viralrecon/samplesheet_full_sispa.csv

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Done! nf-core/test-datasets@a2282e3

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