Comments (3)
adamrtalbot
commented on August 24, 2024
nf-test files are normally called *.nf.test. Could you change it to be nf-test test tests/main_pipeline_cellranger.nf.test? Does it work locally if you type in that command?
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adamrtalbot
commented on August 24, 2024
Changing the name to .nf.test seemed to fix it. Might be a new feature as of nf-test v0.9.0 (vs 0.8.4)
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grst
commented on August 24, 2024
Thanks! I was still using v0.8.4 locally and can reproduce it with v0.9 now.
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Related Issues (20)
- Sample merging does not work if files are named the same
- 'star' in genome configrations ignored HOT 2
- Cellranger mkref resource flags incorrect HOT 3
- Error with CONCAT_H5AD HOT 3
- Running 'cellranger-arc count' with existing genome index
- cellranger-multi implementation follow-up
- Trimming R1 fast files in all aligners HOT 4
- Time limit of AlevinQC HOT 3
- Specify cellranger version HOT 1
- scrnaseq will not recognize my genome file path HOT 2
- `--cellranger_index` only appears to work if `--validate_params false` provided HOT 3
- cellranger_count.py: capture stderr and stdout HOT 4
- Implement sample demultiplexing followed by VDJ + feature barcode analysis per sample HOT 5
- pipeline not compatible with nextflow 23 => PosixFileAttributeView HOT 1
- cellranger count => Your reference does not contain the expected files HOT 2
- Error while excuting emptydrops HOT 1
- nextflow inspect does not work due to missing parameters HOT 2
- Support for 10x Gem-X V4 libraries HOT 5
- Standardize h5ad/seurat var gene annotations across aligners HOT 1
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