Comments (1)
Hi @FriederikeHanssen - Thanks for letting us know about the missing tags. We've just added a few now, hopefully they are helpful to the community in finding the repository.
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Related Issues (20)
- link to example contrastsheet.csv is not working HOT 1
- Empty output for BAM+rMats HOT 2
- make contrasts file names consistent with those of the differentialabundance pipeline HOT 1
- Missing rMATS arguments HOT 2
- DEXSeq-DTU Stager pScreenAdjusted HOT 1
- sashimi_plot error HOT 2
- contrast file problem? HOT 7
- MISO_SASHIMI step fails when using scratch directory HOT 2
- MISO_SASHIMI looks in NXF_HOME subdirectory instead of working directory for output files HOT 4
- The default --miso_genes are invalid when --gencode is specified and cause the pipeline to fail HOT 2
- EDGER_EXON fails if only single entry in contrast sheet HOT 1
- STAGER error: subscript out of bounds HOT 6
- The pipeline should be able to infer strandedness from FASTQ (i.e. allow "auto" for strandedness in the CSV) HOT 2
- Error with rmats.py when running with multiple contrasts: <filename>.bam not found in .rmats files HOT 10
- MISO_SASHIMI error: Could not find MISO output files HOT 4
- test profile: miso_index failure HOT 19
- example contrastsheet.csv missing HOT 1
- DRIMSEQ_FILTER error HOT 5
- STAGER error: subscript out of bounds HOT 4
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