check_contrastsheet not identifying headers even though they're present about rnasplice HOT 2 CLOSED

-- Emily Jennings, PhD Senior Scientist I, Bioinformatics Expansion Therapeutics www.expansionrx.com<http://www.expansionrx.com/>

________________________________ From: James Ashmore ***@***.***> Sent: Tuesday, June 6, 2023 8:37:04 AM To: nf-core/rnasplice ***@***.***> Cc: Emily Jennings ***@***.***>; Mention ***@***.***> Subject: Re: [nf-core/rnasplice] check_contrastsheet not identifying headers even though they're present (Issue #63) Hey @expansion-bioemformatics<https://github.com/expansion-bioemformatics> The issue has been resolved in the dev branch. It occurred because the contrast sheet checker tried to identify the format of your file automatically. Your particular contrast sheet had a lot of "_" characters, so the sniffer thought the file was delimited by this character instead of the "," character. We have now removed the automatic file formatter checker, and require the user to specify the contrast sheet in CSV file format. This is actually what the documentation tells the user to provide, so it is now more-inline with the documentation. Thanks for bringing this to our attention. Let me know if this has solved your problem and I will close the issue. — Reply to this email directly, view it on GitHub<#63 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/A7O5ZINOENI4Y7A5R5EJ5P3XJ4P7BANCNFSM6AAAAAAY3NRTG4>. You are receiving this because you were mentioned.Message ID: ***@***.***>