Related Issues (20)
- new module: riboWaltz
- Have stub-section of vcftools-module produce files
- include bracken build module in fasta_build_add_kraken2 subworkflow
- Fix `cellranger/multi` bugs observed in `scrnaseq` development
- missing environment.yml for gridss
- Unexpected behaviour of cat/cat
- Addition of `samtools cat` in the samtools_sort module broke compatibility with input SAM files
- new module: crabs/dbimport
- new module: insilicoseq/generate
- new module: japsa/capsim
- nf-test for BUSCO and move to BUSCO/BUSCO for BUSCO/PLOT
- Update cellranger multi module to properly handle optional files and FFPE
- modules/nf-core/gawk conda env is broken on some linux distrib
- new module: spacemarkers HOT 1
- nf-test Github actions decompress automatically tar.gz outputs when they should not HOT 2
- new module: TIRLEARNER
- [FEATURE] allow skipping freyja boot subworkflow
- new module: helitronscanner/scanhead
- [FEATURE] Report primary alignment stats in nf-core/fastq_align_bamcmp_bwa subworkflow
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