Related Issues (20)
- Remove warning about broken DeepBGC database links from docs HOT 1
- Add missing essential parameters for antismash HOT 4
- Fix BAKTA publish dir HOT 1
- Split input assemblies into BGC vs ARG/AMP compatible length types HOT 1
- Workflow diagram is broken in `dev` HOT 1
- GUNZIP module is confused by repeated patterns in sample name and fasta path. HOT 2
- deeparg 1.0.4 required to correctly fetch DBs HOT 1
- AMPLIFY_PREDICT exits with a ValueError while checking input HOT 1
- In some cases RGI will not produce all files expected for mving for publishing HOT 5
- The spliting of contigs into _long and _short should only be performed when needed, or at least it should be skippable HOT 1
- Missing abricate database download instructions in usage
- Missing icons for BGC sections in nextflow schema/parameter docs
- improving tool documentation & adding tests HOT 1
- A uniform input for all tools in each screening workflow HOT 2
- Missing Annotation files HOT 2
- Antismash parameter bug HOT 1
- Consider allowing annotation to run even if downstream screening not run
- A special samplesheet can delete all my sequences HOT 3
- nf-test wishlist
- comBGC column BGC_length inaccurate HOT 3
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