Comments (4)
Do you want these as QC or something? I don't really see what this could improve? (But then again I can be blind 😁)
from germline.
Can be used within the validation workflow to check give a similarity score of truth vcf vs called vcf
idea stolen from slack
from germline.
Oh I didn't even think of that, thank you!
from germline.
Added in #107
from germline.
Related Issues (20)
- Output samplesheet by default HOT 1
- Optimize resources for `SAMTOOLS_MERGE` HOT 1
- Improve efficiency of CRAM merging HOT 1
- Remove the need to supply a CRAM file when a GVCF is supplied HOT 1
- Increase default memory in some processes
- Add VarDict calling HOT 5
- Add somatic calling
- Update coverage_fast parameter HOT 1
- Add normalization and decomposing to VCF2DB HOT 4
- Use contigs BED file for genomicsdb HOT 2
- Add downloading of the VEP cache when not given HOT 1
- Create profiles for different analysis HOT 1
- Make Vardict min AF variable per sample HOT 1
- Add `vcf_check` as a safety guard HOT 1
- Save a process, create index within the module HOT 2
- Explore `VariantRecalibrator` and `ApplyVQSR` for better filtering HOT 2
- Add support for bigger families in UPDio HOT 1
- Add `--ped` option
- automap single sample analysis - Execution halted error
- UPDio: generate also output files when no UPD's are found HOT 1
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from germline.