Frequencies data doesn't reflect accessor about auspice HOT 3 CLOSED

This is an issue with the current zika pipeline. It's not fully estimating frequency trajectories the way the flu pipeline does.

At nextflu.org we show a panel with trajectories:

that's not present in the current page at nextstrain.org/zika/. With the full pipeline, there is a frequencies["mutations"] key. Take a look at H3N2_3y_frequencies.json for the full version of what the json should look like.

from auspice.

I think we should separate entropy from frequencies and have two different files entropy.json and frequencies.json. the latter could then be flat, i.e., {'pivots':[2014,2015,2016,], 'mutation_1':[0.1, 0.2, ...]} (where pivots are values on the x-axis). I would also take the clade frequencies out of the tree (they are easily 500kb). the clade frequencies could simply be added to frequencies.json

from auspice.

I like this suggestion.

from auspice.