Related Issues (20)
- filter: Allow weighted subsampling
- ancestral: --genes does not accept file in contrast to --help string HOT 3
- Export fails validation without useful error message when using key for `metadata-id-column` for coloring as well
- ENH: allow export to validate schema for a specific version of auspice
- Augur TreeTime Error. What am i doing wrong? HOT 4
- DEV: Failed to build cvxopt during install from source with arm64/Python 3.8 HOT 2
- export: Automatically minify JSON HOT 2
- Can't install with Python 3.11 on Conda HOT 2
- [ancestral] translate genes/CDSs via nuc seq + annotation HOT 2
- Augur traits file null HOT 1
- IQtree 2.2.3 errors with SIGSEGV when analyzing 130k SARS-CoV-2 seqs HOT 3
- `augur validate` throws an error instead of showing help
- ENH: Error or deduplicate alignment in `augur tree` in iqtree mode, to avoid IQtree error
- Dealing with lower case nucleotides: document and potentially auto-convert
- refine throws error "TypeError: '<' not supported between instances of 'NoneType' and 'str'" HOT 1
- [augur ancestral] input VCF alignment is often overwritten
- ancestral, translate incompatible under certain invocations HOT 1
- [translate] GFFs + node-data input produce invalid output HOT 3
- [translate] GFF files parsed differently if `--genes` supplied
- Run CI against blab/veme-2022 and zika-tutorial
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