neuropoly Goto Github PK

agilent_7t

Various matlab code to manage data from Agilent 7T scanner at MHI

ansible

Ansible roles published to https://galaxy.ansible.com/

atlas-rat

Scripts to generate a microstructure atlas of the rat spinal cord

axonpacking

axonseg

Segment axon and myelin from microscopy data. Written in Matlab.

bibeasy

Set of tools to manage academic bibliography

bids-examples

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

bids-hook

Tiny CI server to run bids-validator using Gitea webhooks

bids-specification

Brain Imaging Data Structure (BIDS) Specification

bids-validator

Validator for the Brain Imaging Data Structure

bids_neuropoly

Python package that deals with BIDS structure for filtering data (specific to NeuroPoly developments)

changelog

Create a changelog file from all the merged pull requests

coda

Deployment and testing repository for https://www.coda-platform.com/

coil-spine7t

Material for the 8Tx/20Rx 7T c-spine coil

coil_simulation

Matlab-based software to simulation B1 field for several geometries of coils.

coil_simulation_web

web version of program for simulating RF coil array for MRI

cortical-surface64mt

Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI

data-management

Repo that deals with datalad aspects for internal use

data-multi-subject-test

Multi-subject data for the Spine Generic project

deep-active-learning

Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)

distriploy

Release & deployment helper

docker

Collection of dockerfiles

domainadaptation

Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

gifmaker

Convert images to GIF animation.

gitea

https://gitea.io fork with https://git-annex.branchable.com support

github-app-token

Impersonate a GitHub App in a GitHub Action

gmseg

Spinal cord gray matter segmentation using deep dilated convolutions.

idea-projects

Ideas for cool projects

idea-siemens

Repository about the installation, management and use of the IDEA Siemens pulse sequence programming station.

infersent

InferSent sentence embeddings