Comments (6)
jovo
commented on June 12, 2024
hi @mattroos :-)
you can, @WillGray @j6k4m8 can point you to python code.
which dataset are you wanting?
we have:
AC3
AC4
various kasthruri thingies
and another dataset from kristen harris (in hippocampus), which is particularly beautiful..
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mattroos
commented on June 12, 2024
Thanks @jovo! Looking for multi-cylinder volume a la Figure 3E in the 2015 paper. Just got done talking to @WillGray about it. Harris data sounds cool. Maybe be smaller than I want but will keep it mind.
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jovo
commented on June 12, 2024
cool, so, issue closed?
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wrgr
commented on June 12, 2024
issue open until we deliver it. :)
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wrgr
commented on June 12, 2024
Here is a link to the download script: https://github.com/neurodata/kasthuri2015/blob/master/claims/claim0_get_data.ipynb
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mattroos
commented on June 12, 2024
Thanks, @WillGray!
from kasthuri2015.
Related Issues (20)
- Claim 1: The 64,000 um3 box imaged at high resolution had roughly 13.7 million cell profiles in its 1850 sections. HOT 5
- Append relevant volume for each Kasthuri claim HOT 1
- Claim 2: Count: Dendrites = 193 (92% Spiny) HOT 1
- Claim 3: Count: Unmyelinated Axons = 1407 HOT 1
- Claim 4: Count: Excitatory (Axons) Synapses = 93% HOT 1
- Claim 5: There were 1,700 synapses at a density of one synapse per 1.13 μm3. HOT 2
- Move Kasthuri claims into a single place HOT 2
- fix kasthuri data map HOT 1
- work on developing more complete set of claims HOT 1
- Claim 6 Count the total number of neuron fragments individually labeled in the volume HOT 2
- Claim 7: The non-cellular (extracellular) space accounts for 6% of the total volume, less than half the extracellular space estimates from living brains. HOT 2
- Move ndprojects kasthuri claims to here. HOT 1
- Enumerated Kasthuri Claim List HOT 1
- Enumerated Kasthuri Claim List HOT 1
- for claims in general HOT 3
- add names for each object
- add touch matrix HOT 5
- specify token for image channel for claim0.ipynb
- neurodata instantion requires an argument HOT 1
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