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api

awesome-community-detection

An awesome collection of community detection papers with implementations.

bioid_ms

MS project

blas-for-apple

tested numpy&scipy compiled for different BLAS libraries for apple m1 processer. Vanilla numpy from conda-forge is compiled for openblas - it works well. Apple's accelerate is blazing fast, but numerically unstable.

first_pub

for Zagidullin & Aldahdooh et al 2019 "DrugComb: an integrative cancer drug combination data portal"

gpdrugmodels

Gaussian Process Models for Drug Response

kalman-and-bayesian-filters-in-python

Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.

lightning-hydra-template

PyTorch Lightning + Hydra. A very general, feature-rich template for rapid and scalable ML experimentation with best practices. ⚡🔥⚡

machine-learning-notebooks

🤖 An authorial collection of Machine Learning fundamentals and useful python notebooks.

mlcourse.ai

Open Machine Learning Course

oeaw_ai_summer_school

Introduction to Machine Learning and Neural Networks, including NNs, CNNs, RNNs, AE, VAE, and GAN

pk

code for Javarappa et al 2018 "Eltrombopag Promotes Megakaryocyte Survival and Signaling in the Presence of Specific Cytotoxic Agents"

ppi

Compiling human protein–protein interactions

pyhsiclasso

Versatile Nonlinear Feature Selection Algorithm for High-dimensional Data

python-cheatsheet

Comprehensive Python Cheatsheet

random

random scripts

repliseq

analysis for Aska et al 2022 "Single-Cell Mononucleotide Microsatellite Analysis Reveals Differential Insertion-Deletion Dynamics in Mouse T Cells"

survival_analysis

code for Zagidullin et al 2022 "Interpretable prognostic modeling of endometrial cancer"

svcca

website