nellore Goto Github PK

awsbdb

Blog post for AWS on Rail-RNA

bowtie2

A fast and sensitive gapped read aligner

burn.fm

Ad-free YouTube playlists circa 2012 ... NO NOW ASPIRATIONALLY OGOGOGOGOGOGOGO

capitalin21stcenturyinr

Piketty in R

cookiecutter

deidentify

Deidentifies LABS consortium data

digitalocean-duffel

Creates permalinks to real locations of data resources and logs accesses

digitalocean-recount

docs.rail.bio

Documentation for Rail-RNA (http://rail.bio)

duffel

Flask backend for routing permalinks to direct URIs of data objects

elephant-bird

Twitter's collection of LZO and Protocol Buffer-related Hadoop, Pig, Hive, and HBase code.

fgfr

A closer look at correlates of a missense mutation in FGFR4

gi2015

Scripts and processed data for reproducing Genome Informatics 2015 talk

hts-nim

nim wrapper for htslib for parsing genomics data files

intropolis

Exon-exon splice junctions across SRA

locfdr-python

Python implementation of Efron, Turnbull, and Narasimhan's R function locfdr v1.1-7, which computes local false discovery rates. See http://cran.r-project.org/web/packages/locfdr/ for more information.

mr1

explores alternative splicing of MR1 across GTEx

nellore.github.io

neocompare

scripts that explore Kahles et al. neojunctions

nitwit

Scan Twitter or Github for available handles

omfgene

discordant alignment filter

polyester

RNA-seq read simulator

pyston

An open-source Python implementation using JIT techniques.

rail

Scalable RNA-seq analysis

rail-dbgap

Protocol for analyzing dbGaP-protected data from SRA with Amazon Elastic MapReduce

recount-landing

recount landing page

recount2.rail.bio

Recount2 website: URLs for gene counts / coverage bigWigs for human SRA RNA-seq

recountmethylation

Utilities for analyzing Recount Methylation database files.

region_matrix

Tool for writing matrix of AUCs of indexed BAMs in regions specified by BED

runs

Scripts for reproducing analyses of large RNA-seq datasets