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awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

bio

A lightweight and high-performance bioinformatics package in Golang

brie

BRIE: Bayesian Regression for Isoform Estimate

category-theory

A formalization of category theory in Coq for personal study and practical work

compute_setup

covid-mobility

cpython

The Python programming language

elpy

Emacs Python Development Environment

flask

A microframework based on Werkzeug, Jinja2 and good intentions

flask-restplus

Fully featured framework for fast, easy and documented API development with Flask

grit

httpie

As easy as httpie /aitch-tee-tee-pie/ 🥧 Modern command line HTTP client – user-friendly curl alternative with intuitive UI, JSON support, syntax highlighting, wget-like downloads, extensions, etc. https://twitter.com/clihttp

learning_scala

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mycosnp-nf

CDCgov/mycosnp-nf

paip-lisp

Lisp code for the textbook "Paradigms of Artificial Intelligence Programming"

python

All Algorithms implemented in Python

python-patterns

A collection of design patterns/idioms in Python

pytudes

Python programs to practice or demonstrate skills.

requests

Python HTTP Requests for Humans™.

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

shell-workshop

Materials from my Strange Loop 2014 workshop, Let's Build a Shell!

spacetimeengine

A Sympy toolkit for exploring the Einstein's field equations.

system-design-primer

Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

vadr

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

web-site