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ammolite

Compressively-accelerated small-molecule search

bitpack

bitpack interface stub for CSC411

cablastp2

Performs BLAST on compressed proteomic data.

cacm-review

chess-rust

Rust implementation of CHESS (Clustered Hierarchical Entropy-Scaling Search)

clam

cluster-barcodes

Simple tool to cluster genetic barcodes

compressive-paper

LaTeX source for paper

csc211-lab0

URI CSC211 lab0

csc211-lab1

URI CSC211 Lab 1

csc411_arith

csc411_image

distances-nmd

Fast and generic distance functions for high-dimensional data.

esfragbag

flib

A command line tool to interface with fragment libraries.

hello

The famous Hello World in Python

homologytesting

cross-validation framework for remote homology detection

io

A set of packages to read and write common file formats produced by computational biology software

io-1

A set of packages to read and write common file formats produced by computational biology software.

mica

MIcrobiomes using Compressive Acceleration

mrfy

Structural Motifs Using Random Fields, stochastic search implementation in Haskell

mrfy-bcb-paper

MRFy paper for ACM-BCB submission

mrfy-bench

Benchmark testing for MRFy

mrfy-icfp

latex soure for paper submission

protein-disorder

Notes and possible monograph on intrinsically disordered proteins

rum-binaries

seq

Provides common operations for dealing with biological sequence data, including data representation and sequence alignment.

ssannotate

A tool for annotating secondary structure for MRFy (and the unreleased SMURF and SMURFLite).

strain-assay-minimization

Simple program to minimize assays needed for molecular barcoding

structure

A Go library that provides types and functions for common operations on protein structures.