nci-gdc Goto Github PK

aliquot-level-maf

aliquot-maf-cwl

CWL tools and workflows for generating and processing aliquot-MAF

aliquot-maf-tools

Tools for creating and filtering aliquot-level MAFs

bam_readgroup_to_json

Extract a readgroup from a BAM, and write it as json

bio-colors

bio-tarball-to-fastqgz

Tool to extract fastq files from complicated tarballs and provide them as standard gzipped fastq files with metadata as json.

bio_qcmetrics_tool

Framework for serializing QC metrics into different formats for bioinformatics workflows

biobambam-docker

boxplot

bwa-docker

cdisutils

Utility modules for GDC functionality

cwltool

Common Workflow Language reference implementation

dcc-import

Reference data importers

django

The Web framework for perfectionists with deadlines.

dnacopy-tool

fastq_cleaner

FASTQ Vendor Failed Reads Removal

fastqc-docker

fastqc_db

fastqc_to_json

fqvendorfail-docker

Software docker for fqvendorfail

gatk-docker

gatk4-mutect2-tool

gatk4_mutect2_cwl

gdc-client

GDC Data Transfer Tool

gdc-dnaseq-cwl

CWL for GDC DNASeq workflows

gdc-docs

Official repository for GDC User Guides in Markdown format

gdc-frontend-framework

gdc-maf-tool

gdc-mirnaseq-cwl

CWL workflows and tools for the miRNA-Seq workflow

gdc-models

Git repository centrally stores and serves GDC data models defined in static YAML files