KeyError when running run_bluebert_multi_labels.py about bluebert HOT 7 CLOSED

Please use "," to separate the labels. For example,

labels \t sentence
0_0,1_0,2_0,3_0,4_0,5_0,6_0,7_0,8_0,9_0	\t Assessment and Plan... <more notes here>

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Thanks for the quick response. Are you saying also that we should have four columns in train.tsv?

Also, does each label have to be in “0_1” underscore format? What is this meant to illustrate?

And in your code snippet, are you illustrating one row of data?

Thanks for reading

from bluebert.

1. two columns, one for labels and the other for text
2. no. you need to figure out how to represent multi-labels yourself.
3. the header and one row of data.

from bluebert.

Okay thanks again. Just to clarify: If I only have a binary classification task, such as 0,1, then I am assuming the format can be

0 \t Assessment and Plan ...
1 \t Prognosis... 

Where above I am illustrating two rows of data: the first row with a label of 0, the second row with a label of 1. Also no headers in the above

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For binary classification, please use run_bluebert.py

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Thanks Yifan. It seems to be running for me now with run_bluebert.py.

As a note to other readers, it seems that the KeyError is an issue mainly on the original Google Research BERT github. A lot of folks (ex: google-research/bert#559) filed issues with a similar error, and they had to go into the get_labels implemented method and change the method. For me, I changed the labels to return ['0', '1'] to fit the labels of my binary classification task in rub_bluebert.py.

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I want to use run_bluebert_multi_labels.py for mimic-iv. I have separated the data into train.tsv and test.tsv. when I run the py file, I receive an error. I want to know how should I feed my labels. now they are like 1sda2,1s6w6,5fef,...
it should be in this 1_0,2_0,.. format?

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