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allosteric-paths

autism_rnaseq

Collaboration with Chetty lab to analyze Autism RNA-seq datasets

bif-516-molecular-modelling-and-drug-design

bioinformatics-manual

Official manual for the Bioinformatics course taught at the CEU San Pablo Bioengineering degree.

biopython-notebook

Notebooks to introduce biopython

biotools

A list of useful bioinformatics resources

clustering-test

colabfold

Making Protein folding accessible to all via Google Colab!

compgen2016_variantcalling

Labs and Lectures for 2016 Computational Genomics Workshop in Berlin

continuous_analysis_phylo

A simple phylogenetic tree building example of Continuous Analysis

data-mining-biochar

Exploring Nitrogen Retention in Soil: Data Mining and Predictive Modeling with Biochar Data

dppin

DPPIN: A Biological Repository of Dynamic Protein-Protein Interaction Network Data, arXiv: 2107.02168.

dynamic-ppi-construction

Build up 36 time steps dynamic PPI network using gene expression and static PPIs

essential-protein-prediction

Using CNN and Node2Vec model to predict essential proteins

evcouplings

Evolutionary couplings from protein and RNA sequence alignments

hic_tools

A collection of tools for Hi-C data analysis

hisat2-stringtie-deseq2-rnaseq

inf281-lecture-notes

Lecture Notes for INF281 Basics of Bioinformatics Sequence Analysis

machine-learning-lectures

mara

maxent

MaxEnt code for fitting simulation outcomes/statistical models to observations

ms-scripts

msm-learn

Learning how to learn Markov State Models of conformational dynamics

msmbuilder

:building_construction: Statistical models for biomolecular dynamics :building_construction:

mutual-information-from-msa

ngs_course

Course on analysis of NGS data (RNA-Seq. and ATAC-Seq.) using Galaxy

phd

plotting-in-r-for-bioinformatics

py4bio

Public data for the book Python for Bioinformatics

rf-tica-md