Comments (3)
wonjininfo
commented on May 23, 2024
4
Hi @AFNANAMIN, it depends on the task and the dataset.
For NER, training would usually takes 1~20 hours (with gpu; titan xp) depends on the settings and the dataset. It may take longer if you wish to get the best score.
Thanks!
Wonjin
from biobert-pretrained.
AFNANAMIN
commented on May 23, 2024
2
can you plz tell the estimated amount of time required in training i am using the same data provided in your github repo
from biobert-pretrained.
jhyuklee
commented on May 23, 2024
Hi,
it seems that the code is running on cpus not on gpus. Otherwise, check hyperparameters like batch size.
(it would be nice to post finetuning related issues in dmis-lab/biobert)
Thanks!
from biobert-pretrained.
Related Issues (20)
- Files for BioBERT tokenizer HOT 4
- Regarding Relation Extraction (RE), does it mean it's classifying whether the two marked entities have the defined relations? HOT 1
- Problem with loading model HOT 1
- Has Pre-training corpus chinese? HOT 1
- Pre-trained BioBERT를 distilBERT처럼 사용하려면 HOT 1
- Are there Chinese version bio-bert pretrained model? HOT 1
- BIOBERT corpus HOT 5
- Biobert custom vocab HOT 1
- KeyError when running NER on pretrained BioBERT model HOT 1
- License HOT 1
- I cant open five links of fine-tuning BioBERT HOT 1
- Question: Which part of PMC is used?
- using pretrained biobert matrix
- How do you pre-process the PMC articles?
- Any plan to have updated pretrained model? HOT 1
- The pre-trained weights seems not available in the google drive links provided.
- Using HuggingFace transformers library
- Failed to find any matching files for biobert-pretrained/biobert_v1.1_pubmed/biobert_model.ckpt HOT 7
- Can't download the pre-trained weight from "release" section HOT 2
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