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Nauman Ahmed's Projects

bwa icon bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

bwa-gasal2 icon bwa-gasal2

BWA-MEM program accelerated with the GASAL2 library

cpp-perf icon cpp-perf

Small header-only C++11 to measure code execution time and performance.

cub icon cub

CUB is a flexible library of cooperative threadblock primitives and other utilities for CUDA kernel programming.

cuda-samples icon cuda-samples

Samples for CUDA Developers which demonstrates features in CUDA Toolkit

gasal icon gasal

A CUDA library of DNA/RNA sequence alignment algorithms.

gase icon gase

A generic DNA read aligner that allows to use different combinations of seeding and extension algorithms.

gase-gasal2 icon gase-gasal2

GASE/BWA-MEM seed-extension accelerated with GASAL2

lab1 icon lab1

Advanced Computing Systems Lab1 files

mulled icon mulled

Mulled - Automatized Containerized Software Repository

nvbio icon nvbio

NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.

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