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n3mo avatar n3mo commented on August 30, 2024

Thanks for posting this issue. It seems that a dependency of MassMine was updated on Feb 11 which is causing this issue. Anyone who installs MassMine after that date will experience the same error. I'm working on the solution and will let you know when the issue has been addressed.
Cheers!

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n3mo avatar n3mo commented on August 30, 2024

MassMine has been updated to fix this issue. To update, work from a terminal and run:

cd ~/path/to/massmine/
git pull
./massmine upgrade

After executing these steps, you should be able to authenticate and use MassMine according to the instructions at http://www.massmine.org/docs/index.html

Let me know if you have any further issues, and thanks again for reporting this.

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tdannecy avatar tdannecy commented on August 30, 2024

Still having issues after the upgrade. Do you think this is due to an older version of R running on UF's servers?

capture

In addition: Warning message:
package `rjson' is not available (for R version 3.0.2)
Execution halted

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n3mo avatar n3mo commented on August 30, 2024

That is indeed the reason for your trouble. However, UF already has the offending package (rjson) installed on their cluster. I assume you received this new error message when you ran the ./massmine upgrade command. If you ignore my previous advice and skip that final command you may not run into any problems.

That is, the basic installation instructions should work at this point without running ./massmine upgrade

If this doesn't help, I'll look into getting things squared away on UF's cluster as a special case.

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n3mo avatar n3mo commented on August 30, 2024

I have installed MassMine from scratch on UF's research computing to ensure that things are still working. Everything seems to be working for the latest version of MassMine (0.8.2), so I am closing this issue.

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