Jahangir Alam's Projects
Public material for CS109
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Slides for Algorithms for DNA Sequencing Coursera class
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Algorithms, 4th edition textbook code and libraries
antiSMASH
Code Repo for API course in Fullstack ND
Applied Computational Genomics Course at UU: Spring 2020
Homepage for Auburn University Bioinformatics Bootcamp
Git introduction for Auburn University Bioinformatics Bootcamp
This GitHub will be dedicated to organizing the efforts made by students learning biological scripting to analyzing real datasets for a class group project.
A curated list of awesome Bioinformatics libraries and software.
:memo: An awesome Data Science repository to learn and apply for real world problems.
A curated list of awesome deep learning applications in the field of computational biology
🐢 A collection of awesome browser-side JavaScript libraries, resources and shiny things.
:microscope: :leo: Bacterial ribosomal RNA predictor
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
bedtools - the swiss army knife for genome arithmetic
Homework #5 for BIOL7180
BWK awk modified for biological data
Bioinformatics code libraries and scripts
Conda recipes for the bioconda channel.
:microscope: Path to a free self-taught education in Bioinformatics!
Biostar Q&A
Issue tracker for the Biostar Handbook
PSU bootcamp on reproducible research