myousif9 Goto Github PK

3dmprageise

Super nifty AFNI script to MPRAGEise your MP2RAGEs

anat_preproc

autobids

Automated Dicom to BIDS and pipelines using compute canada

cbig

ciftify_reconall_snakebids

convnets_vs_vi

denoise-fmri

Snakemake BIDS app for denoising fmriprep, uses the snakebids package for running snakemake workflow as bids app

dm2_hippo_struc_analysis

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

freesurfer-parcel-distribution-visualization

A simple pipeline that uses snakemake, plotly and jinja2 to quickly visualize distributions of volume or surface quantities

gif_your_nifti

How to create fancy GIFs from an MRI brain image

gradcorrect

BIDS app for correcting gradient non-linearities, saves corrected images as mirrored BIDS dataset, along with warp and intensity-correction fields

hippieegatlas

hippocampal-autotop-vis

hippograd

hipposample

hippunfold_toolbox

jnp_wc_brightness

khanlab-osf

mp2rage

mp2rage-wrapper

mp2rage_correction

BIDS App for correction of residual B1 in MP2RAGE based on Sa2RAGE (code from JP Marques)

msccodebase

The Midnight Scanning Club Codebase

neural_networks_project

pcntoolkit

Toolbox for normative modelling and spatial inference of neuroimaging data. https://pcntoolkit.readthedocs.io/en/latest/

projectweek

Website for NA-MIC Project Weeks

rosalind-problem-solutions

My solutions to bioinformatics challenges on rosalind.info in R or python

skull-strip-reports

Tool to check quality of skull stripped images using snakemake, Brainsprite and streamlit

skull_strip_reports

Automatically generates reports showing transparent overlay of beast skull stripped images over original images to efficiently verify the efficacy of skull stripping.

smk_extract_gradients